HL_8ZGY_035

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|U|1605, 8ZGY|1|LA|U|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_035 not in the Motif Atlas

Homologous match to HL_8CRE_034

Geometric discrepancy: 0.081

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZGY|1|LA|G|1598
8ZGY|1|LA|U|1599
8ZGY|1|LA|U|1600
8ZGY|1|LA|A|1601
8ZGY|1|LA|A|1602
8ZGY|1|LA|G|1603
8ZGY|1|LA|A|1604
8ZGY|1|LA|U|1605
8ZGY|1|LA|U|1606
8ZGY|1|LA|C|1607

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LZ

Large ribosomal subunit protein uL23

Chain Li

Large ribosomal subunit protein eL34A