HL_8ZGY_038

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_038 not in the Motif Atlas

Homologous match to HL_8P9A_149

Geometric discrepancy: 0.133

The information below is about HL_8P9A_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZGY|1|LA|G|1718
8ZGY|1|LA|U|1719
8ZGY|1|LA|U|1720
8ZGY|1|LA|U|1721
8ZGY|1|LA|A|1722
8ZGY|1|LA|U|1723
8ZGY|1|LA|C|1724

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Lr

Large ribosomal subunit protein eL43A