HL_8ZGY_040
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGUG
- Length
- 5 nucleotides
- Bulged bases
- 8ZGY|1|LA|C|1792, 8ZGY|1|LA|G|1793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGY_040 not in the Motif Atlas
- Homologous match to HL_8CRE_039
- Geometric discrepancy: 0.1035
- The information below is about HL_8CRE_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
8ZGY|1|LA|C|1791
8ZGY|1|LA|C|1792
8ZGY|1|LA|G|1793
8ZGY|1|LA|U|1794
8ZGY|1|LA|G|1795
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lr
- Large ribosomal subunit protein eL43A
Coloring options: