HL_8ZGY_045

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8ZGY|1|LA|A|2137, 8ZGY|1|LA|A|2138, 8ZGY|1|LA|U|2139, 8ZGY|1|LA|A|2143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_045 not in the Motif Atlas

Homologous match to HL_8P9A_157

Geometric discrepancy: 0.065

The information below is about HL_8P9A_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8ZGY|1|LA|U|2134
8ZGY|1|LA|C|2135
8ZGY|1|LA|U|2136
8ZGY|1|LA|A|2137
8ZGY|1|LA|A|2138
8ZGY|1|LA|U|2139
8ZGY|1|LA|U|2140
8ZGY|1|LA|A|2141
8ZGY|1|LA|A|2142
8ZGY|1|LA|A|2143
8ZGY|1|LA|A|2144

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Ll

Large ribosomal subunit protein eL37A