HL_8ZGY_046

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8ZGY|1|LA|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_046 not in the Motif Atlas

Homologous match to HL_8CRE_045

Geometric discrepancy: 0.0725

The information below is about HL_8CRE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|LA|A|2163
8ZGY|1|LA|G|2164
8ZGY|1|LA|A|2165
8ZGY|1|LA|A|2166
8ZGY|1|LA|A|2167
8ZGY|1|LA|G|2168
8ZGY|1|LA|U|2169

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LJ

Large ribosomal subunit protein eL8A

Chain LP

Large ribosomal subunit protein eL15A