HL_8ZGY_058

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_058 not in the Motif Atlas

Homologous match to HL_8CRE_058

Geometric discrepancy: 0.085

The information below is about HL_8CRE_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|LA|U|2743
8ZGY|1|LA|G|2744
8ZGY|1|LA|A|2745
8ZGY|1|LA|A|2746
8ZGY|1|LA|A|2747
8ZGY|1|LA|G|2748

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LG

Large ribosomal subunit protein uL18

Chain LV

Large ribosomal subunit protein eL21A

Chain Lq

Large ribosomal subunit protein eL42A