HL_8ZGY_061

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|G|2897

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_061 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0955

The information below is about HL_8P9A_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8ZGY|1|LA|A|2896
8ZGY|1|LA|G|2897
8ZGY|1|LA|C|2898
8ZGY|1|LA|A|2899
8ZGY|1|LA|G|2900
8ZGY|1|LA|A|2901
8ZGY|1|LA|A|2902
8ZGY|1|LA|U|2903

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain Lo

Large ribosomal subunit protein eL40A