HL_8ZGY_064

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_064 not in the Motif Atlas

Homologous match to HL_8CRE_064

Geometric discrepancy: 0.055

The information below is about HL_8CRE_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZGY|1|LA|C|3024
8ZGY|1|LA|G|3025
8ZGY|1|LA|A|3026
8ZGY|1|LA|G|3027
8ZGY|1|LA|A|3028
8ZGY|1|LA|G|3029

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain Lo

Large ribosomal subunit protein eL40A