HL_8ZGY_067

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8ZGY|1|LA|U|3194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_067 not in the Motif Atlas

Geometric match to HL_8P9A_116

Geometric discrepancy: 0.1519

The information below is about HL_8P9A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8ZGY|1|LA|C|3193
8ZGY|1|LA|U|3194
8ZGY|1|LA|U|3195
8ZGY|1|LA|G|3196

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LO

Large ribosomal subunit protein eL14A