HL_8ZGY_069

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|U|3303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_069 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.0552

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZGY|1|LA|G|3302
8ZGY|1|LA|U|3303
8ZGY|1|LA|A|3304
8ZGY|1|LA|U|3305
8ZGY|1|LA|A|3306
8ZGY|1|LA|C|3307
8ZGY|1|LA|G|3308
8ZGY|1|LA|A|3309
8ZGY|1|LA|C|3310

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A

Chain Lf

Large ribosomal subunit protein eL31A