HL_8ZGY_084

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8ZGY|1|S2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_084 not in the Motif Atlas

Geometric match to HL_8CRE_198

Geometric discrepancy: 0.1219

The information below is about HL_8CRE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZGY|1|S2|G|330
8ZGY|1|S2|A|331
8ZGY|1|S2|U|332
8ZGY|1|S2|A|333
8ZGY|1|S2|G|334
8ZGY|1|S2|U|335
8ZGY|1|S2|G|336
8ZGY|1|S2|G|337
8ZGY|1|S2|C|338

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A