HL_8ZGY_101

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8ZGY|1|S2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_101 not in the Motif Atlas

Geometric match to HL_8CRE_216

Geometric discrepancy: 0.1661

The information below is about HL_8CRE_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8ZGY|1|S2|G|1188
8ZGY|1|S2|A|1189
8ZGY|1|S2|C|1190
8ZGY|1|S2|U|1191
8ZGY|1|S2|C|1192
8ZGY|1|S2|A|1193
8ZGY|1|S2|A|1194
8ZGY|1|S2|C|1195
8ZGY|1|S2|A|1196
8ZGY|1|S2|C|1197

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SJ

Small ribosomal subunit protein uS10

Chain Tb

Transfer RNA; tRNA