HL_8ZGY_103

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_103 not in the Motif Atlas

Geometric match to HL_8CRE_029

Geometric discrepancy: 0.1006

The information below is about HL_8CRE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|S2|A|1296
8ZGY|1|S2|G|1297
8ZGY|1|S2|U|1298
8ZGY|1|S2|G|1299
8ZGY|1|S2|A|1300
8ZGY|1|S2|U|1301

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SP

Small ribosomal subunit protein uS2A

Chain SR

Small ribosomal subunit protein uS5