HL_8ZGY_107

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_107 not in the Motif Atlas

Geometric match to HL_8CRE_045

Geometric discrepancy: 0.2557

The information below is about HL_8CRE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|S2|C|1501
8ZGY|1|S2|G|1502
8ZGY|1|S2|A|1503
8ZGY|1|S2|G|1504
8ZGY|1|S2|A|1505
8ZGY|1|S2|G|1506

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A