3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCUAGGAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZGY_113 not in the Motif Atlas
Homologous match to HL_5E81_212
Geometric discrepancy: 0.2324
The information below is about HL_5E81_212
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.6
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

8ZGY|1|Tb|G|32
8ZGY|1|Tb|C|33
8ZGY|1|Tb|U|34
8ZGY|1|Tb|A|35
8ZGY|1|Tb|G|36
8ZGY|1|Tb|G|37
8ZGY|1|Tb|A|38
8ZGY|1|Tb|A|39
8ZGY|1|Tb|C|40

Current chains

Chain Tb
tRNA (77-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SF
Small ribosomal subunit protein uS9A
Chain mR
RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')

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