HL_8ZH3_016

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_016 not in the Motif Atlas

Homologous match to HL_8CRE_015

Geometric discrepancy: 0.0749

The information below is about HL_8CRE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZH3|1|LA|U|707
8ZH3|1|LA|G|708
8ZH3|1|LA|A|709
8ZH3|1|LA|A|710
8ZH3|1|LA|A|711
8ZH3|1|LA|G|712

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain LS

Large ribosomal subunit protein eL18A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lk

Large ribosomal subunit protein eL36A