HL_8ZH3_019

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_019 not in the Motif Atlas

Homologous match to HL_8P9A_131

Geometric discrepancy: 0.0638

The information below is about HL_8P9A_131

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZH3|1|LA|G|844
8ZH3|1|LA|G|845
8ZH3|1|LA|A|846
8ZH3|1|LA|A|847
8ZH3|1|LA|A|848
8ZH3|1|LA|C|849

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lr

Large ribosomal subunit protein eL43A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SY

Small ribosomal subunit protein uS15