HL_8ZH3_022

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8ZH3|1|LA|C|959, 8ZH3|1|LA|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_022 not in the Motif Atlas

Homologous match to HL_8CRE_021

Geometric discrepancy: 0.1156

The information below is about HL_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8ZH3|1|LA|C|958
8ZH3|1|LA|C|959
8ZH3|1|LA|U|960
8ZH3|1|LA|C|961
8ZH3|1|LA|A|962
8ZH3|1|LA|G|963

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lc

Large ribosomal subunit protein uL15

Chain Ld

Large ribosomal subunit protein eL29

Chain Lq

Large ribosomal subunit protein eL42A