HL_8ZH3_046

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8ZH3|1|LA|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_046 not in the Motif Atlas

Homologous match to HL_8CRE_045

Geometric discrepancy: 0.0824

The information below is about HL_8CRE_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZH3|1|LA|A|2164
8ZH3|1|LA|G|2165
8ZH3|1|LA|A|2166
8ZH3|1|LA|A|2167
8ZH3|1|LA|A|2168
8ZH3|1|LA|G|2169
8ZH3|1|LA|U|2170

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LJ

Large ribosomal subunit protein eL8A

Chain LP

Large ribosomal subunit protein eL15A