HL_8ZH3_052

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8ZH3|1|LA|A|2569, 8ZH3|1|LA|U|2571, 8ZH3|1|LA|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_052 not in the Motif Atlas

Homologous match to HL_9PN5_051

Geometric discrepancy: 0.5448

The information below is about HL_9PN5_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56131.4

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8ZH3|1|LA|C|2568
8ZH3|1|LA|A|2569
8ZH3|1|LA|U|2570
8ZH3|1|LA|U|2571
8ZH3|1|LA|C|2572
8ZH3|1|LA|G|2573

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lb

Large ribosomal subunit protein eL27A