HL_8ZH3_071
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_071 not in the Motif Atlas
- Geometric match to HL_8OI5_068
- Geometric discrepancy: 0.0693
- The information below is about HL_8OI5_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZH3|1|LB|U|32
8ZH3|1|LB|U|33
8ZH3|1|LB|C|34
8ZH3|1|LB|C|35
8ZH3|1|LB|C|36
8ZH3|1|LB|G|37
8ZH3|1|LB|U|38
8ZH3|1|LB|C|39
8ZH3|1|LB|C|40
8ZH3|1|LB|G|41
8ZH3|1|LB|A|42
8ZH3|1|LB|U|43
8ZH3|1|LB|C|44
8ZH3|1|LB|A|45
Current chains
- Chain LB
- 5S rRNA (121-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- Large ribosomal subunit protein uL18
- Chain LM
- Large ribosomal subunit protein uL5B
Coloring options: