HL_8ZH3_083

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8ZH3|1|S2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_083 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.1031

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8ZH3|1|S2|G|243
8ZH3|1|S2|A|244
8ZH3|1|S2|U|245
8ZH3|1|S2|G|246
8ZH3|1|S2|A|247
8ZH3|1|S2|U|248
8ZH3|1|S2|U|249
8ZH3|1|S2|C|250

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SX

Small ribosomal subunit protein uS17A