HL_8ZH3_088

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8ZH3|1|S2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_088 not in the Motif Atlas

Geometric match to HL_8P9A_154

Geometric discrepancy: 0.1589

The information below is about HL_8P9A_154

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8ZH3|1|S2|C|414
8ZH3|1|S2|C|415
8ZH3|1|S2|A|416
8ZH3|1|S2|A|417
8ZH3|1|S2|G|418
8ZH3|1|S2|G|419

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain LX

Large ribosomal subunit protein uL14A

Chain ST

Small ribosomal subunit protein eS6A