HL_8ZH3_091
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_091 not in the Motif Atlas
- Geometric match to HL_8CRE_204
- Geometric discrepancy: 0.2932
- The information below is about HL_8CRE_204
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|S2|A|520
8ZH3|1|S2|A|521
8ZH3|1|S2|U|522
8ZH3|1|S2|G|523
8ZH3|1|S2|U|524
8ZH3|1|S2|A|525
8ZH3|1|S2|A|526
8ZH3|1|S2|A|527
8ZH3|1|S2|U|528
8ZH3|1|S2|A|529
8ZH3|1|S2|C|530
8ZH3|1|S2|C|531
8ZH3|1|S2|U|532
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
Coloring options: