HL_8ZH3_096
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_096 not in the Motif Atlas
- Geometric match to HL_8CRE_210
- Geometric discrepancy: 0.1038
- The information below is about HL_8CRE_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8ZH3|1|S2|A|900
8ZH3|1|S2|G|901
8ZH3|1|S2|G|902
8ZH3|1|S2|U|903
8ZH3|1|S2|G|904
8ZH3|1|S2|A|905
8ZH3|1|S2|A|906
8ZH3|1|S2|A|907
8ZH3|1|S2|U|908
8ZH3|1|S2|U|909
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26B
- Chain mR
- RNA (5'-R(P*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
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