HL_8ZH3_109
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8ZH3|1|S2|U|1557, 8ZH3|1|S2|U|1558, 8ZH3|1|S2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZH3_109 not in the Motif Atlas
- Geometric match to HL_8CRE_223
- Geometric discrepancy: 0.1111
- The information below is about HL_8CRE_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|S2|A|1550
8ZH3|1|S2|U|1551
8ZH3|1|S2|U|1552
8ZH3|1|S2|G|1553
8ZH3|1|S2|U|1554
8ZH3|1|S2|A|1555
8ZH3|1|S2|A|1556
8ZH3|1|S2|U|1557
8ZH3|1|S2|U|1558
8ZH3|1|S2|A|1559
8ZH3|1|S2|U|1560
8ZH3|1|S2|U|1561
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS19
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SM
- Small ribosomal subunit protein uS14A
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