HL_8ZHB_007

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8ZHB|1|LA|G|218, 8ZHB|1|LA|A|219, 8ZHB|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.0442

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8ZHB|1|LA|G|216
8ZHB|1|LA|U|217
8ZHB|1|LA|G|218
8ZHB|1|LA|A|219
8ZHB|1|LA|G|220
8ZHB|1|LA|A|221
8ZHB|1|LA|A|222
8ZHB|1|LA|U|223
8ZHB|1|LA|C|224

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A