HL_8ZHB_037

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8ZHB|1|LA|U|1686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHB_037 not in the Motif Atlas

Homologous match to HL_8CRE_036

Geometric discrepancy: 0.4192

The information below is about HL_8CRE_036

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8ZHB|1|LA|G|1679
8ZHB|1|LA|U|1680
8ZHB|1|LA|U|1681
8ZHB|1|LA|A|1682
8ZHB|1|LA|U|1683
8ZHB|1|LA|C|1684
8ZHB|1|LA|U|1685
8ZHB|1|LA|U|1686
8ZHB|1|LA|U|1687

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LW

Large ribosomal subunit protein eL22A

Chain Lf

Large ribosomal subunit protein eL31A