HL_8ZHB_049
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 8ZHB|1|LA|U|2297
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHB_049 not in the Motif Atlas
- Homologous match to HL_8CRE_048
- Geometric discrepancy: 0.0794
- The information below is about HL_8CRE_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8ZHB|1|LA|U|2291
8ZHB|1|LA|C|2292
8ZHB|1|LA|U|2293
8ZHB|1|LA|A|2294
8ZHB|1|LA|A|2295
8ZHB|1|LA|U|2296
8ZHB|1|LA|U|2297
8ZHB|1|LA|A|2298
8ZHB|1|LA|G|2299
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ta
- Transfer RNA; tRNA
Coloring options: