HL_8ZHC_010

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_010 not in the Motif Atlas

Homologous match to HL_8CRE_010

Geometric discrepancy: 0.0524

The information below is about HL_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZHC|1|LA|A|357
8ZHC|1|LA|G|358
8ZHC|1|LA|U|359
8ZHC|1|LA|G|360
8ZHC|1|LA|A|361
8ZHC|1|LA|U|362

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain Ll

Large ribosomal subunit protein eL37A

Chain Ln

Large ribosomal subunit protein eL39

Chain pp

Peptide 2k