HL_8ZHC_011

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_011 not in the Motif Atlas

Homologous match to HL_8CRE_011

Geometric discrepancy: 0.0868

The information below is about HL_8CRE_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZHC|1|LA|U|382
8ZHC|1|LA|G|383
8ZHC|1|LA|A|384
8ZHC|1|LA|A|385
8ZHC|1|LA|A|386
8ZHC|1|LA|A|387

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LR

Large ribosomal subunit protein uL22A

Chain pp

Peptide 2k