HL_8ZHC_019
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_019 not in the Motif Atlas
- Homologous match to HL_8P9A_131
- Geometric discrepancy: 0.0979
- The information below is about HL_8P9A_131
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
8ZHC|1|LA|G|843
8ZHC|1|LA|G|844
8ZHC|1|LA|A|845
8ZHC|1|LA|A|846
8ZHC|1|LA|A|847
8ZHC|1|LA|C|848
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
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