HL_8ZHC_020
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8ZHC|1|LA|U|878, 8ZHC|1|LA|A|882, 8ZHC|1|LA|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_020 not in the Motif Atlas
- Homologous match to HL_8CRE_019
- Geometric discrepancy: 0.0559
- The information below is about HL_8CRE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8ZHC|1|LA|A|875
8ZHC|1|LA|C|876
8ZHC|1|LA|G|877
8ZHC|1|LA|U|878
8ZHC|1|LA|G|879
8ZHC|1|LA|C|880
8ZHC|1|LA|A|881
8ZHC|1|LA|A|882
8ZHC|1|LA|A|883
8ZHC|1|LA|U|884
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain pp
- Peptide 2k
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