HL_8ZHC_033

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_033 not in the Motif Atlas

Homologous match to HL_8CRE_032

Geometric discrepancy: 0.0849

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZHC|1|LA|G|1543
8ZHC|1|LA|A|1544
8ZHC|1|LA|A|1545
8ZHC|1|LA|G|1546
8ZHC|1|LA|C|1547
8ZHC|1|LA|U|1548

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LP

Large ribosomal subunit protein eL15A

Chain Ll

Large ribosomal subunit protein eL37A