HL_8ZHC_036

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|U|1635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_036 not in the Motif Atlas

Homologous match to HL_8CRE_035

Geometric discrepancy: 0.3882

The information below is about HL_8CRE_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZHC|1|LA|G|1633
8ZHC|1|LA|G|1634
8ZHC|1|LA|U|1635
8ZHC|1|LA|A|1636
8ZHC|1|LA|A|1637
8ZHC|1|LA|C|1638

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lb

Large ribosomal subunit protein eL27A

Chain Li

Large ribosomal subunit protein eL34A