HL_8ZHC_045
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|2137, 8ZHC|1|LA|A|2138, 8ZHC|1|LA|U|2139, 8ZHC|1|LA|A|2143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_045 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.059
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8ZHC|1|LA|U|2134
8ZHC|1|LA|C|2135
8ZHC|1|LA|U|2136
8ZHC|1|LA|A|2137
8ZHC|1|LA|A|2138
8ZHC|1|LA|U|2139
8ZHC|1|LA|U|2140
8ZHC|1|LA|A|2141
8ZHC|1|LA|A|2142
8ZHC|1|LA|A|2143
8ZHC|1|LA|A|2144
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain pp
- Peptide 2k
Coloring options: