HL_8ZHC_054

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

8ZHC|1|LA|A|2636, 8ZHC|1|LA|C|2643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_054 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.0727

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8ZHC|1|LA|U|2632
8ZHC|1|LA|U|2633
8ZHC|1|LA|A|2634
8ZHC|1|LA|A|2635
8ZHC|1|LA|A|2636
8ZHC|1|LA|C|2637
8ZHC|1|LA|G|2638
8ZHC|1|LA|A|2639
8ZHC|1|LA|U|2640
8ZHC|1|LA|A|2641
8ZHC|1|LA|A|2642
8ZHC|1|LA|C|2643
8ZHC|1|LA|G|2644

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain LV

Large ribosomal subunit protein eL21A

Chain Ld

Large ribosomal subunit protein eL29