HL_8ZHC_061

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8ZHC|1|LA|G|2897, 8ZHC|1|LA|A|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_061 not in the Motif Atlas

Geometric match to HL_2DER_005

Geometric discrepancy: 0.3919

The information below is about HL_2DER_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZHC|1|LA|A|2895
8ZHC|1|LA|A|2896
8ZHC|1|LA|G|2897
8ZHC|1|LA|C|2898
8ZHC|1|LA|A|2899
8ZHC|1|LA|G|2900
8ZHC|1|LA|A|2901
8ZHC|1|LA|A|2902
8ZHC|1|LA|U|2903
8ZHC|1|LA|U|2904

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain Lo

Large ribosomal subunit protein eL40A