HL_8ZHC_064

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|A|3026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_064 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1255

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZHC|1|LA|C|3024
8ZHC|1|LA|G|3025
8ZHC|1|LA|A|3026
8ZHC|1|LA|G|3027
8ZHC|1|LA|A|3028
8ZHC|1|LA|G|3029

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain Lo

Large ribosomal subunit protein eL40A

Chain eR

Eukaryotic peptide chain release factor subunit 1