HL_8ZHC_069

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8ZHC|1|LA|U|3303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_069 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.0518

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZHC|1|LA|G|3302
8ZHC|1|LA|U|3303
8ZHC|1|LA|A|3304
8ZHC|1|LA|U|3305
8ZHC|1|LA|A|3306
8ZHC|1|LA|C|3307
8ZHC|1|LA|G|3308
8ZHC|1|LA|A|3309
8ZHC|1|LA|C|3310

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A