HL_8ZHC_070

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8ZHC|1|LA|U|3350, 8ZHC|1|LA|U|3351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_070 not in the Motif Atlas

Geometric match to HL_8P9A_134

Geometric discrepancy: 0.2696

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8ZHC|1|LA|C|3349
8ZHC|1|LA|U|3350
8ZHC|1|LA|U|3351
8ZHC|1|LA|G|3352

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A