HL_8ZHC_082

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8ZHC|1|S2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_082 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.1123

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8ZHC|1|S2|G|243
8ZHC|1|S2|A|244
8ZHC|1|S2|U|245
8ZHC|1|S2|G|246
8ZHC|1|S2|A|247
8ZHC|1|S2|U|248
8ZHC|1|S2|U|249
8ZHC|1|S2|C|250

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A