HL_8ZHC_092

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8ZHC|1|S2|G|765, 8ZHC|1|S2|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZHC_092 not in the Motif Atlas

Geometric match to HL_8CRE_207

Geometric discrepancy: 0.1017

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8ZHC|1|S2|U|764
8ZHC|1|S2|G|765
8ZHC|1|S2|U|766
8ZHC|1|S2|U|767
8ZHC|1|S2|C|768
8ZHC|1|S2|A|769
8ZHC|1|S2|A|770
8ZHC|1|S2|A|771
8ZHC|1|S2|G|772

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A