HL_8ZHC_108
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8ZHC|1|S2|U|1554, 8ZHC|1|S2|A|1555, 8ZHC|1|S2|U|1557, 8ZHC|1|S2|U|1558, 8ZHC|1|S2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_108 not in the Motif Atlas
- Homologous match to HL_9PN5_108
- Geometric discrepancy: 0.5015
- The information below is about HL_9PN5_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.4
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8ZHC|1|S2|A|1550
8ZHC|1|S2|U|1551
8ZHC|1|S2|U|1552
8ZHC|1|S2|G|1553
8ZHC|1|S2|U|1554
8ZHC|1|S2|A|1555
8ZHC|1|S2|A|1556
8ZHC|1|S2|U|1557
8ZHC|1|S2|U|1558
8ZHC|1|S2|A|1559
8ZHC|1|S2|U|1560
8ZHC|1|S2|U|1561
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS19
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SM
- Small ribosomal subunit protein uS14A
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