HL_8ZTV_043

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8ZTV|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZTV_043 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.091

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZTV|1|a|A|382
8ZTV|1|a|C|383
8ZTV|1|a|A|384
8ZTV|1|a|C|385
8ZTV|1|a|G|386
8ZTV|1|a|U|387
8ZTV|1|a|G|388
8ZTV|1|a|G|389
8ZTV|1|a|U|390
8ZTV|1|a|A|391
8ZTV|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

RNA (5'-R(P*CP*A)-3')

Chain w

50S ribosomal protein L28