HL_9AX8_012

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9AX8|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1037

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9AX8|1|A|A|382
9AX8|1|A|C|383
9AX8|1|A|A|384
9AX8|1|A|C|385
9AX8|1|A|G|386
9AX8|1|A|U|387
9AX8|1|A|G|388
9AX8|1|A|G|389
9AX8|1|A|U|390
9AX8|1|A|A|391
9AX8|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28