HL_9AXU_036

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GCCUCAU

Length

7 nucleotides

Bulged bases

9AXU|1|2|C|1801, 9AXU|1|2|C|1802, 9AXU|1|2|U|1803

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AXU_036 not in the Motif Atlas

Homologous match to HL_8C3A_039

Geometric discrepancy: 0.5766

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9AXU|1|2|G|1800
9AXU|1|2|C|1801
9AXU|1|2|C|1802
9AXU|1|2|U|1803
9AXU|1|2|C|1804
9AXU|1|2|A|1805
9AXU|1|2|U|1806

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein eL19B