HL_9AXU_047

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9AXU|1|2|A|2460, 9AXU|1|2|A|2461, 9AXU|1|2|C|2462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|G|2457
9AXU|1|2|G|2458
9AXU|1|2|G|2459
9AXU|1|2|A|2460
9AXU|1|2|A|2461
9AXU|1|2|C|2462
9AXU|1|2|G|2463
9AXU|1|2|G|2464
9AXU|1|2|G|2465
9AXU|1|2|C|2466

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL3A

Chain q

Large ribosomal subunit protein eL32A