HL_9AXU_054

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9AXU|1|2|U|2819
9AXU|1|2|U|2820
9AXU|1|2|C|2821
9AXU|1|2|A|2822
9AXU|1|2|G|2823
9AXU|1|2|U|2824
9AXU|1|2|G|2825
9AXU|1|2|U|2826
9AXU|1|2|G|2827

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein eL42

Chain c

Large ribosomal subunit protein eL18B

Chain f

Large ribosomal subunit protein eL21B

Chain m

Large ribosomal subunit protein uL15B