HL_9AXU_057

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

9AXU|1|2|U|2937, 9AXU|1|2|U|2938

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AXU_057 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.4004

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9AXU|1|2|C|2935
9AXU|1|2|G|2936
9AXU|1|2|U|2937
9AXU|1|2|U|2938
9AXU|1|2|C|2939
9AXU|1|2|A|2940
9AXU|1|2|U|2941
9AXU|1|2|A|2942
9AXU|1|2|G|2943

Current chains

Chain 2

28S ribosomal RNA

Nearby chains